nf-core_modules/tests/modules/samtools/mpileup/test.yml

- name: samtools mpileup test_samtools_mpileup
  command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/mpileup
  files:
    - path: output/samtools/test.mpileup
      md5sum: 958e6bead4103d72026f80153b6b5150
    - path: output/samtools/versions.yml

- name: samtools mpileup test_samtools_mpileup_intervals
  command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup_intervals -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/mpileup
  files:
    - path: output/samtools/test.mpileup
      md5sum: 958e6bead4103d72026f80153b6b5150
    - path: output/samtools/versions.yml
Mpileup also likes intervals (#1445) * Mpileup also likes intervals * Also update meta yml with inclusive input and intervals Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-03-25 02:46:51 -04:00			`- name: samtools mpileup test_samtools_mpileup`
			`command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 11:02:58 -05:00			`tags:`
			`- samtools`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 04:10:52 -04:00			`- samtools/mpileup`
Restructure tests to run individually for each module 2021-02-03 11:02:58 -05:00			`files:`
Mpileup also likes intervals (#1445) * Mpileup also likes intervals * Also update meta yml with inclusive input and intervals Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-03-25 02:46:51 -04:00			`- path: output/samtools/test.mpileup`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 04:10:44 -04:00			`md5sum: 958e6bead4103d72026f80153b6b5150`
Mpileup also likes intervals (#1445) * Mpileup also likes intervals * Also update meta yml with inclusive input and intervals Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> 2022-03-25 02:46:51 -04:00			`- path: output/samtools/versions.yml`

			`- name: samtools mpileup test_samtools_mpileup_intervals`
			`command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup_intervals -c tests/config/nextflow.config`
			`tags:`
			`- samtools`
			`- samtools/mpileup`
			`files:`
			`- path: output/samtools/test.mpileup`
			`md5sum: 958e6bead4103d72026f80153b6b5150`
			`- path: output/samtools/versions.yml`