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48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
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name: roary
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description: Calculate pan-genome from annotated bacterial assemblies in GFF3 format
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keywords:
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- gff
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- pan-genome
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- alignment
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tools:
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- roary:
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description: Rapid large-scale prokaryote pan genome analysis
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homepage: http://sanger-pathogens.github.io/Roary/
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documentation: http://sanger-pathogens.github.io/Roary/
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tool_dev_url: https://github.com/sanger-pathogens/Roary/
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doi: "http://dx.doi.org/10.1093/bioinformatics/btv421"
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licence: ['GPL v3']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gff:
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type: file
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description: A set of GFF3 formatted files
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pattern: "*.{gff}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- results:
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type: directory
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description: Directory containing Roary result files
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pattern: "*/*"
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- aln:
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type: file
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description: Core-genome alignment produced by Roary (Optional)
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pattern: "*.{aln}"
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authors:
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- "@rpetit3"
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