2021-01-29 18:31:33 +00:00
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- name: Run bowtie2 build
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command: nextflow run ./tests/software/bowtie2 -profile docker -entry test_bowtie2_build -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2_build
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files:
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- path: output/bowtie2/bowtie2/NC_010473.1.bt2
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md5sum: 4db22d92e72111a5fbf609b3d9a43015
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- path: output/bowtie2/bowtie2/NC_010473.2.bt2
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md5sum: f4429ec74ee0064732c4bb26718a3eb1
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- path: output/bowtie2/bowtie2/NC_010473.3.bt2
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie2/bowtie2/NC_010473.4.bt2
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie2/bowtie2/NC_010473.rev.1.bt2
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md5sum: 4ccfee8857c3b1c69857e5ecdef597aa
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- path: output/bowtie2/bowtie2/NC_010473.rev.2.bt2
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md5sum: 5e8fb4af677eb3a57a40e76dc3f6db72
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- name: Run bowtie2 index and align single-end
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command: nextflow run ./tests/software/bowtie2 -profile docker -entry test_bowtie2_alignment_single_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2_align
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files:
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- path: output/bowtie2/bowtie2/NC_010473.1.bt2
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md5sum: 4db22d92e72111a5fbf609b3d9a43015
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- path: output/bowtie2/bowtie2/NC_010473.2.bt2
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md5sum: f4429ec74ee0064732c4bb26718a3eb1
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- path: output/bowtie2/bowtie2/NC_010473.3.bt2
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie2/bowtie2/NC_010473.4.bt2
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie2/bowtie2/NC_010473.rev.1.bt2
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md5sum: 4ccfee8857c3b1c69857e5ecdef597aa
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- path: output/bowtie2/bowtie2/NC_010473.rev.2.bt2
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md5sum: 5e8fb4af677eb3a57a40e76dc3f6db72
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- path: output/bowtie2/test.bowtie2.log
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md5sum: 90041c264231be535042adb93a279356
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- path: output/bowtie2/test.bam
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md5sum: 906102f401d8234b6473790988fb09cf
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- name: Run bowtie2 index and align paired-end
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command: nextflow run ./tests/software/bowtie2 -profile docker -entry test_bowtie2_alignment_paired_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2_align
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files:
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- path: output/bowtie2/bowtie2/NC_010473.1.bt2
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2021-01-30 22:08:17 +00:00
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md5sum: 4db22d92e72111a5fbf609b3d9a43015
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2021-01-29 18:31:33 +00:00
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- path: output/bowtie2/bowtie2/NC_010473.2.bt2
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2021-01-30 22:08:17 +00:00
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md5sum: f4429ec74ee0064732c4bb26718a3eb1
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2021-01-29 18:31:33 +00:00
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- path: output/bowtie2/bowtie2/NC_010473.3.bt2
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie2/bowtie2/NC_010473.4.bt2
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie2/bowtie2/NC_010473.rev.1.bt2
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2021-01-30 22:08:17 +00:00
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md5sum: 4ccfee8857c3b1c69857e5ecdef597aa
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2021-01-29 18:31:33 +00:00
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- path: output/bowtie2/bowtie2/NC_010473.rev.2.bt2
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2021-01-30 22:08:17 +00:00
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md5sum: 5e8fb4af677eb3a57a40e76dc3f6db72
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2021-01-29 18:31:33 +00:00
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- path: output/bowtie2/test.bowtie2.log
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md5sum: 9f9eb40b5f57e0f2d5c874f2c1b5cfd5
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- path: output/bowtie2/test.bam
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md5sum: 732a33cd9816b38ea9b919c25eeb78f8
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