nf-core_modules/modules/motus/profile/meta.yml

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name: "motus_profile"
description: Taxonomic meta-omics profiling using universal marker genes
keywords:
- classify
- metagenomics
- fastq
- taxonomic profiling
tools:
- "motus":
description: "Marker gene-based OTU (mOTU) profiling"
homepage: "https://motu-tool.org/"
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documentation: "https://github.com/motu-tool/mOTUs/wiki"
tool_dev_url: "https://github.com/motu-tool/mOTUs"
doi: "10.1038/s41467-019-08844-4"
licence: "['GPL v3']"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input fastq/fasta files of size 1 and 2 for single-end and paired-end data,
respectively.
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Or the intermediate bam file mapped by bwa to the mOTUs database or
the output bam file from motus profile
pattern: "*.{fastq,fq,fasta,fa,fastq.gz,fq.gz,fasta.gz,fa.gz,.bam}"
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- db:
type: directory
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description: |
mOTUs database downloaded by `motus downloadDB`
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- out:
type: file
description: Results with taxonomic classification of each read
pattern: "*.out"
- bam:
type: file
description: Optional intermediate sorted BAM file from BWA
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pattern: "*.{bam}"
authors:
- "@jianhong"