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nf-core_modules/tests/modules/picard/collecthsmetrics/test.yml

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Picard/collecthsmetrics (#927) * added template * integrated module * added fasta index info * test works, have placeholder data for baits until test-data PR is merged * added new files to config * updated test files * fixing fails :sparkles: * okay final fix here on the md5sum :face_palm: * md5sum variable * update meta.yml to reflect consistency to main.nf * reverted version so conda works * Apply suggestions from code review Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> * md5sum can't be generated consistently for output Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
2021-11-10 04:52:54 -05:00
- name: picard collecthsmetrics test_picard_collecthsmetrics
add tests
2022-05-22 00:43:48 -04:00
command: nextflow run ./tests/modules/picard/collecthsmetrics -entry test_picard_collecthsmetrics -c ./tests/config/nextflow.config -c ./tests/modules/picard/collecthsmetrics/nextflow.config
Picard/collecthsmetrics (#927) * added template * integrated module * added fasta index info * test works, have placeholder data for baits until test-data PR is merged * added new files to config * updated test files * fixing fails :sparkles: * okay final fix here on the md5sum :face_palm: * md5sum variable * update meta.yml to reflect consistency to main.nf * reverted version so conda works * Apply suggestions from code review Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> * md5sum can't be generated consistently for output Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
2021-11-10 04:52:54 -05:00
tags:
add tests
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- picard/collecthsmetrics
Picard/collecthsmetrics (#927) * added template * integrated module * added fasta index info * test works, have placeholder data for baits until test-data PR is merged * added new files to config * updated test files * fixing fails :sparkles: * okay final fix here on the md5sum :face_palm: * md5sum variable * update meta.yml to reflect consistency to main.nf * reverted version so conda works * Apply suggestions from code review Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> * md5sum can't be generated consistently for output Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
2021-11-10 04:52:54 -05:00
- picard
add tests
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files:
- path: output/picard/test.CollectHsMetrics.coverage_metrics
contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
- name: picard collecthsmetrics test_picard_collecthsmetrics_nofasta
command: nextflow run ./tests/modules/picard/collecthsmetrics -entry test_picard_collecthsmetrics_nofasta -c ./tests/config/nextflow.config -c ./tests/modules/picard/collecthsmetrics/nextflow.config
tags:
Picard/collecthsmetrics (#927) * added template * integrated module * added fasta index info * test works, have placeholder data for baits until test-data PR is merged * added new files to config * updated test files * fixing fails :sparkles: * okay final fix here on the md5sum :face_palm: * md5sum variable * update meta.yml to reflect consistency to main.nf * reverted version so conda works * Apply suggestions from code review Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> * md5sum can't be generated consistently for output Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
2021-11-10 04:52:54 -05:00
- picard/collecthsmetrics
add tests
2022-05-22 00:43:48 -04:00
- picard
Picard/collecthsmetrics (#927) * added template * integrated module * added fasta index info * test works, have placeholder data for baits until test-data PR is merged * added new files to config * updated test files * fixing fails :sparkles: * okay final fix here on the md5sum :face_palm: * md5sum variable * update meta.yml to reflect consistency to main.nf * reverted version so conda works * Apply suggestions from code review Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> * md5sum can't be generated consistently for output Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
2021-11-10 04:52:54 -05:00
files:
update picard/collecthsmetrics (#1542) * update picard/collecthsmetrics * syntax fixes, bugfixes * add tests Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2022-04-22 04:13:57 -04:00
- path: output/picard/test.CollectHsMetrics.coverage_metrics
add tests
2022-05-22 00:43:48 -04:00
contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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