mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
19 lines
632 B
Text
19 lines
632 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { GATK4_GATHERPILEUPSUMMARIES } from '../../../../modules/gatk4/gatherpileupsummaries/main.nf'
|
||
|
|
|
||
|
|
workflow test_gatk4_gatherpileupsummaries {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
[file(params.test_data['homo_sapiens']['illumina']['test_pileups_table'], checkIfExists: true)]
|
||
|
|
//file(params.test_data['homo_sapiens']['illumina']['test_pileups_table'], checkIfExists: true)]
|
||
|
|
]
|
||
|
|
|
||
|
|
dict = file(params.test_data['homo_sapiens']['genome']['genome_21_dict'], checkIfExists: true)
|
||
|
|
|
||
|
|
GATK4_GATHERPILEUPSUMMARIES ( input, dict )
|
||
|
|
}
|