nf-core_modules/tests/modules/bcftools/consensus/test.yml

- name: bcftools consensus test_bcftools_consensus
  command: nextflow run tests/modules/bcftools/consensus -entry test_bcftools_consensus -c tests/config/nextflow.config
  tags:
    - bcftools/consensus
    - bcftools
  files:
    - path: output/bcftools/test.fa
      md5sum: e57d3e4d113f989bc069c5fd61627091
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- name: bcftools consensus test_bcftools_consensus`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/bcftools/consensus -entry test_bcftools_consensus -c tests/config/nextflow.config`
Rearranging tests to test each module separately 2021-02-08 14:16:51 +00:00			`tags:`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- bcftools/consensus`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- bcftools`
Rearranging tests to test each module separately 2021-02-08 14:16:51 +00:00			`files:`
			`- path: output/bcftools/test.fa`
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix 2021-03-09 09:04:08 +00:00			`md5sum: e57d3e4d113f989bc069c5fd61627091`