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nf-core_modules/tests/modules/bcftools/isec/test.yml

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update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-24 18:14:11 +00:00
- name: bcftools isec test_bcftools_isec
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/bcftools/isec -entry test_bcftools_isec -c tests/config/nextflow.config
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
tags:
- bcftools
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 08:10:52 +00:00
- bcftools/isec
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
files:
- path: output/bcftools/test/0000.vcf.gz
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix
2021-03-09 09:04:08 +00:00
md5sum: fc178eb342a91dc0d1d568601ad8f8e2
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-24 18:14:11 +00:00
- path: output/bcftools/test/0001.vcf.gz.tbi
md5sum: 36e11bf96ed0af4a92caa91a68612d64
- path: output/bcftools/test/sites.txt
md5sum: 1cea3fbde7f6d3c97f3d39036f9690df
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
- path: output/bcftools/test/0000.vcf.gz.tbi
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix
2021-03-09 09:04:08 +00:00
md5sum: 36e11bf96ed0af4a92caa91a68612d64
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
- path: output/bcftools/test/0001.vcf.gz
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix
2021-03-09 09:04:08 +00:00
md5sum: fc178eb342a91dc0d1d568601ad8f8e2
Rearranging tests to test each module separately
2021-02-08 14:16:51 +00:00
- path: output/bcftools/test/README.txt
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix
2021-03-09 09:04:08 +00:00
md5sum: 10fc33b66522645600d44afbd41fb792
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