nf-core_modules/tests/modules/last/split/test.yml

- name: last split test_last_split
  command: nextflow run tests/modules/last/split -entry test_last_split -c tests/config/nextflow.config
  tags:
    - last
    - last/split
  files:
    - path: output/last/contigs.genome.split.maf.gz
      md5sum: 2a177444f63c9294767a67a0247f0f05
New last/split module to find split alignments. (#511) * New last/split module to find split alignments. The `last-split` tool distributed with [LAST](https://gitlab.com/mcfrith/last) finds split or spliced alignments in a MAF file that is produced with, for example, LAST `lastal` command. This new module is part of the work discribed in Issue #464. During this development, we fix the versiob of LAST to 1219 to ensure consistency. We will upgrade it later. * Update software/last/split/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-24 19:15:57 +00:00			`- name: last split test_last_split`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/last/split -entry test_last_split -c tests/config/nextflow.config`
New last/split module to find split alignments. (#511) * New last/split module to find split alignments. The `last-split` tool distributed with [LAST](https://gitlab.com/mcfrith/last) finds split or spliced alignments in a MAF file that is produced with, for example, LAST `lastal` command. This new module is part of the work discribed in Issue #464. During this development, we fix the versiob of LAST to 1219 to ensure consistency. We will upgrade it later. * Update software/last/split/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-05-24 19:15:57 +00:00			`tags:`
			`- last`
			`- last/split`
			`files:`
			`- path: output/last/contigs.genome.split.maf.gz`
			`md5sum: 2a177444f63c9294767a67a0247f0f05`