mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
18 lines
1 KiB
Markdown
18 lines
1 KiB
Markdown
|
# Updating the docker container and making a new module release
|
||
|
|
|
||
|
|
bcl-convert is a commercial tool from Illumina. The container provided for the bcl-convert nf-core module is not provided nor supported by Illumina. Updating the bcl-convert versions in the container and pushing the update to Dockerhub needs to be done manually.
|
||
|
|
|
||
|
|
1. Navigate to the appropriate download page. - [BCL Convert](https://support.illumina.com/sequencing/sequencing_software/bcl-convert/downloads.html): download the rpm of the desired bcl-convert version with `curl` or `wget`.
|
||
|
|
2. Unpack the RPM package using `rpm2cpio bcl-convert-*.rpm | cpio -i --make-directories`. Place the executable located in `<unpack_dir>/usr/bin/bcl-convert` in the same folder where the Dockerfile lies.
|
||
|
|
3. Create and test the container:
|
||
|
|
|
||
|
|
```bash
|
||
|
|
docker build . -t nfcore/bclconvert:<VERSION>
|
||
|
|
```
|
||
|
|
|
||
|
|
4. Access rights are needed to push the container to the Dockerhub nfcore organization, please ask a core team member to do so.
|
||
|
|
|
||
|
|
```bash
|
||
|
|
docker push nfcore/bclconvert:<VERSION>
|
||
|
|
```
|