nf-core_modules/modules/cellranger/count/meta.yml

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name: cellranger_count
description: Module to use Cell Ranger's pipelines analyze sequencing data produced from Chromium Single Cell Gene Expression.
keywords:
- align
- count
- reference
tools:
- cellranger:
description: Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.
homepage: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger
documentation: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
tool_dev_url: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
doi: ""
licence: 10x Genomics EULA
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
- reference:
type: folder
description: Folder containing all the reference indices needed by Cell Ranger
output:
- outs:
type: file
description: Files containing the outputs of Cell Ranger
pattern: "sample-${meta.gem}/outs/*"
- versions:
type: file
description: File containing software version
pattern: "versions.yml"
authors:
- "@ggabernet"
- "@Emiller88"