2021-09-23 08:13:04 +00:00
|
|
|
name: diamond_blastp
|
|
|
|
|
description: Queries a DIAMOND database using blastp mode
|
|
|
|
|
keywords:
|
|
|
|
|
- fasta
|
|
|
|
|
- diamond
|
|
|
|
|
- blastp
|
|
|
|
|
- DNA sequence
|
|
|
|
|
tools:
|
|
|
|
|
- diamond:
|
|
|
|
|
description: Accelerated BLAST compatible local sequence aligner
|
|
|
|
|
homepage: https://github.com/bbuchfink/diamond
|
|
|
|
|
documentation: https://github.com/bbuchfink/diamond/wiki
|
|
|
|
|
tool_dev_url: https://github.com/bbuchfink/diamond
|
|
|
|
|
doi: "doi:10.1038/s41592-021-01101-x"
|
|
|
|
|
licence: ['GPL v3.0']
|
|
|
|
|
|
|
|
|
|
input:
|
|
|
|
|
- meta:
|
|
|
|
|
type: map
|
|
|
|
|
description: |
|
|
|
|
|
Groovy Map containing sample information
|
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
|
- fasta:
|
|
|
|
|
type: file
|
|
|
|
|
description: Input fasta file containing query sequences
|
|
|
|
|
pattern: "*.{fa,fasta}"
|
|
|
|
|
- db:
|
|
|
|
|
type: directory
|
|
|
|
|
description: Directory containing the protein blast database
|
|
|
|
|
pattern: "*"
|
|
|
|
|
|
|
|
|
|
output:
|
|
|
|
|
- txt:
|
|
|
|
|
type: file
|
|
|
|
|
description: File containing blastp hits
|
|
|
|
|
pattern: "*.{blastp.txt}"
|
2021-10-03 07:20:26 +00:00
|
|
|
- versions:
|
2021-09-23 08:13:04 +00:00
|
|
|
type: file
|
2021-10-03 07:20:26 +00:00
|
|
|
description: File containing software versions
|
2021-09-27 08:41:24 +00:00
|
|
|
pattern: "versions.yml"
|
2021-09-23 08:13:04 +00:00
|
|
|
|
|
|
|
|
authors:
|
|
|
|
|
- "@spficklin"
|
