nf-core_modules/modules/plink/extract/meta.yml

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name: plink_extract
description: Subset plink bfiles with a text file of variant identifiers
keywords:
- extract
- plink
tools:
- plink:
description: Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
homepage: None
documentation: None
tool_dev_url: None
doi: ""
licence: ['GPL']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bed:
type: file
description: PLINK binary biallelic genotype table
pattern: "*.{bed}"
- bim:
type: file
description: PLINK extended MAP file
pattern: "*.{bim}"
- fam:
type: file
description: PLINK sample information file
pattern: "*.{fam}"
- variants:
type: file
description: A text file containing variant identifiers to keep (one per line)
pattern: "*.{keep}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bed:
type: file
description: PLINK binary biallelic genotype table
pattern: "*.{bed}"
- bim:
type: file
description: PLINK extended MAP file
pattern: "*.{bim}"
- fam:
type: file
description: PLINK sample information file
pattern: "*.{fam}"
authors:
- "@nebfield"