nf-core_modules/tests/modules/antismash/antismashlite/test.yml

- name: antismash antismashlite test_antismashlite
  command: nextflow run tests/modules/antismash/antismashlite -entry test_antismashlite -c tests/config/nextflow.config
  tags:
    - antismash/antismashlite
    - antismash
  files:
    - path: output/antismash/test/NZ_CP069563.1.region001.gbk
      contains: ['/tool="antismash"']
    - path: output/antismash/test/NZ_CP069563.1.region002.gbk
      contains: ['/tool="antismash"']
    - path: output/antismash/test/css/bacteria.css
      md5sum: 8b3c2f8b143d5245a5f42f55803c532c
    - path: output/antismash/test/genome.gbk
      contains: ['/tool="antismash"']
    - path: output/antismash/test/genome.json
      contains: ['{"version": "6.0.1", "input_file": "genome.fna", "records": [{"id": "NZ_CP069563.1", "seq": {"data":']
    - path: output/antismash/test/genome.zip
    - path: output/antismash/test/index.html
      md5sum: de787e865c3a1eec143a19d2facb4de4
    - path: output/antismash/test/js/antismash.js
      md5sum: 58e90c3d783ae014cc3d51849bcb50a2
    - path: output/antismash/test/js/jquery.js
      md5sum: 397754ba49e9e0cf4e7c190da78dda05
    - path: output/antismash/test/js/jquery.tablesorter.min.js
      md5sum: 5e9e08cef4d1be0eaa538e6eb28809a7
    - path: output/antismash/test/regions.js
      contains: ['"seq_id": "NZ_CP069563.1"']
    - path: output/antismash/test/test.log
      contains: ["antiSMASH version: 6.0.1"]
    - path: output/antismash/versions.yml
      md5sum: 759431a43da33e2ef8e2d0ebd79a439b
    - path: output/gunzip1/genome.fna
      md5sum: dafd38f5454b54fbea38245d773062a5
    - path: output/gunzip2/genome.gff
      md5sum: 9b9c848b1946d43fa68128f4d6316052