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nf-core_modules/tests/modules/antismash/antismashlitedownloaddatabases/test.yml

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Antismashlite download databases (#1426) * Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-21 08:38:17 +00:00
- name: antismash antismashlitedownloaddatabases test_antismash_antismashlitedownloaddatabases
command: nextflow run tests/modules/antismash/antismashlitedownloaddatabases -entry test_antismash_antismashlitedownloaddatabases -c tests/config/nextflow.config
tags:
Add antismash download DB: missing container folders as output channels (#1567) * Add missing container folders as output channels * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tool name * Update test output checksum Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-27 10:40:04 +00:00
- antismash/antismashlitedownloaddatabases
Merge remote-tracking branch 'origin' into motus_profile
2022-05-05 13:41:13 +00:00
- antismash
Antismashlite download databases (#1426) * Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-21 08:38:17 +00:00
files:
- path: output/antismash/versions.yml
Add antismash download DB: missing container folders as output channels (#1567) * Add missing container folders as output channels * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tool name * Update test output checksum Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-27 10:40:04 +00:00
md5sum: 24859c67023abab99de295d3675a24b6
Antismashlite download databases (#1426) * Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-21 08:38:17 +00:00
- path: output/antismash/antismash_db
- path: output/antismash/antismash_db/clusterblast
- path: output/antismash/antismash_db/clustercompare
- path: output/antismash/antismash_db/pfam
- path: output/antismash/antismash_db/resfam
- path: output/antismash/antismash_db/tigrfam
Merge remote-tracking branch 'origin' into motus_profile
2022-05-05 13:41:13 +00:00
- path: output/antismash/antismash_dir
- path: output/antismash/antismash_dir/detection/hmm_detection/data/bgc_seeds.hmm
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