nf-core_modules/tests/modules/samtools/bam2fq/test.yml

- name: samtools bam2fq test_samtools_bam2fq_nosplit
  command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c tests/config/nextflow.config
  tags:
    - samtools/bam2fq
    - samtools
  files:
    - path: output/samtools/test_interleaved.fq.gz
    - path: output/samtools/versions.yml
      md5sum: 4973eac1b6a8f090d5fcd4456d65a894

- name: samtools bam2fq test_samtools_bam2fq_withsplit
  command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c tests/config/nextflow.config
  tags:
    - samtools/bam2fq
    - samtools
  files:
    - path: output/samtools/test_1.fq.gz
      md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed
    - path: output/samtools/test_2.fq.gz
      md5sum: e679ec035d3208785e704458d6b68c8c
    - path: output/samtools/test_other.fq.gz
      md5sum: 709872fc2910431b1e8b7074bfe38c67
    - path: output/samtools/test_singleton.fq.gz
      md5sum: 709872fc2910431b1e8b7074bfe38c67
    - path: output/samtools/versions.yml
      md5sum: e92d21bbcda2fed7cb438d95c51edff0
Bam2fq (#958) * added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print 2021-10-29 08:46:34 +00:00			`- name: samtools bam2fq test_samtools_bam2fq_nosplit`
Merge remote-tracking branch 'origin' into motus_profile 2022-05-05 13:41:13 +00:00			`command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c tests/config/nextflow.config`
Bam2fq (#958) * added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print 2021-10-29 08:46:34 +00:00			`tags:`
			`- samtools/bam2fq`
			`- samtools`
			`files:`
			`- path: output/samtools/test_interleaved.fq.gz`
Merge remote-tracking branch 'origin' into motus_profile 2022-05-05 13:41:13 +00:00			`- path: output/samtools/versions.yml`
			`md5sum: 4973eac1b6a8f090d5fcd4456d65a894`
Bam2fq (#958) * added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print 2021-10-29 08:46:34 +00:00
			`- name: samtools bam2fq test_samtools_bam2fq_withsplit`
Merge remote-tracking branch 'origin' into motus_profile 2022-05-05 13:41:13 +00:00			`command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c tests/config/nextflow.config`
Bam2fq (#958) * added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print 2021-10-29 08:46:34 +00:00			`tags:`
			`- samtools/bam2fq`
			`- samtools`
			`files:`
			`- path: output/samtools/test_1.fq.gz`
update samtools version to 1.15 (#1358) * update samtools version to 1.15 * Update checksums 2022-02-28 11:42:29 +00:00			`md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed`
Bam2fq (#958) * added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print 2021-10-29 08:46:34 +00:00			`- path: output/samtools/test_2.fq.gz`
update samtools version to 1.15 (#1358) * update samtools version to 1.15 * Update checksums 2022-02-28 11:42:29 +00:00			`md5sum: e679ec035d3208785e704458d6b68c8c`
Bam2fq (#958) * added template for module * update main * added specific code * wrong variable name in else script * added tests for both split and nosplit * docker test successful - updating yaml * adding echo to version print 2021-10-29 08:46:34 +00:00			`- path: output/samtools/test_other.fq.gz`
			`md5sum: 709872fc2910431b1e8b7074bfe38c67`
			`- path: output/samtools/test_singleton.fq.gz`
			`md5sum: 709872fc2910431b1e8b7074bfe38c67`
Merge remote-tracking branch 'origin' into motus_profile 2022-05-05 13:41:13 +00:00			`- path: output/samtools/versions.yml`
			`md5sum: e92d21bbcda2fed7cb438d95c51edff0`