nf-core_modules/modules/hpsuissero/meta.yml

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name: hpsuissero
description: Serotype prediction of Haemophilus parasuis assemblies
keywords:
- bacteria
- fasta
- haemophilus
tools:
- hpsuissero:
description: Rapid Haemophilus parasuis serotyping pipeline for Nanpore data
homepage: https://github.com/jimmyliu1326/HpsuisSero
documentation: https://github.com/jimmyliu1326/HpsuisSero
tool_dev_url: https://github.com/jimmyliu1326/HpsuisSero
doi: ""
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: Assembly in FASTA format
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,faa,faa.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- tsv:
type: file
description: Tab-delimited serotype prediction
pattern: "*.{tsv}"
authors:
- "@rpetit3"