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46 lines
1.1 KiB
YAML
46 lines
1.1 KiB
YAML
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name: controlfreec_freec2circos
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description: Format Freec output to circos input format
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keywords:
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- cna
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- cnv
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- somatic
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- single
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- tumor-only
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tools:
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- controlfreec:
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description: Copy number and genotype annotation from whole genome and whole exome sequencing data.
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homepage: http://boevalab.inf.ethz.ch/FREEC
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documentation: http://boevalab.inf.ethz.ch/FREEC/tutorial.html
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tool_dev_url: https://github.com/BoevaLab/FREEC/
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doi: "10.1093/bioinformatics/btq635"
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licence: ["GPL >=2"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ratio:
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type: file
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description: ratio file generated by FREEC
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pattern: "*.ratio.txt"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- circos:
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type: file
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description: Txt file
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pattern: "*.circos.txt"
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authors:
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- "@FriederikeHanssen"
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