nf-core_modules/modules/pirate/meta.yml

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name: pirate
description: Pangenome toolbox for bacterial genomes
keywords:
- gff
- pan-genome
- alignment
tools:
- pirate:
description: Pangenome analysis and threshold evaluation toolbox
homepage: https://github.com/SionBayliss/PIRATE
documentation: https://github.com/SionBayliss/PIRATE/wiki
tool_dev_url: https://github.com/SionBayliss/PIRATE
doi: "https://doi.org/10.1093/gigascience/giz119"
licence: ["GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gff:
type: file
description: A set of GFF3 formatted files
pattern: "*.{gff}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- results:
type: directory
description: Directory containing PIRATE result files
pattern: "*/*"
- aln:
type: file
description: Core-genome alignment produced by PIRATE (Optional)
pattern: "*.{fasta}"
authors:
- "@rpetit3"