mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
48 lines
1.7 KiB
YAML
48 lines
1.7 KiB
YAML
|
- name: bbmap bbduk test_bbmap_bbduk_single_end
|
||
|
|
command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_single_end -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bbmap/bbduk
|
||
|
|
files:
|
||
|
|
- path: output/bbmap/test.trim.bbduk.log
|
||
|
|
contains:
|
||
|
|
- "Input is being processed as unpaired"
|
||
|
|
- path: output/bbmap/test.trim.fastq.gz
|
||
|
|
md5sum: a87d0cbd5ced7df8bf1751e4cb407482
|
||
|
|
|
||
|
|
- name: bbmap bbduk test_bbmap_bbduk_paired_end
|
||
|
|
command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_paired_end -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bbmap/bbduk
|
||
|
|
files:
|
||
|
|
- path: output/bbmap/test.trim.bbduk.log
|
||
|
|
contains:
|
||
|
|
- "Input is being processed as paired"
|
||
|
|
- path: output/bbmap/test.trim_1.fastq.gz
|
||
|
|
md5sum: a87d0cbd5ced7df8bf1751e4cb407482
|
||
|
|
- path: output/bbmap/test.trim_2.fastq.gz
|
||
|
|
md5sum: 406e068fbe198f02b48e7e210cc0c69f
|
||
|
|
|
||
|
|
- name: bbmap bbduk test_bbmap_bbduk_se_ref
|
||
|
|
command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_se_ref -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bbmap/bbduk
|
||
|
|
files:
|
||
|
|
- path: output/bbmap/test.trim.bbduk.log
|
||
|
|
contains:
|
||
|
|
- "Input is being processed as unpaired"
|
||
|
|
- path: output/bbmap/test.trim.fastq.gz
|
||
|
|
md5sum: 3970e82605c7d109bb348fc94e9eecc0
|
||
|
|
|
||
|
|
- name: bbmap bbduk test_bbmap_bbduk_pe_ref
|
||
|
|
command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_pe_ref -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- bbmap/bbduk
|
||
|
|
files:
|
||
|
|
- path: output/bbmap/test.trim.bbduk.log
|
||
|
|
contains:
|
||
|
|
- "Input is being processed as paired"
|
||
|
|
- path: output/bbmap/test.trim_1.fastq.gz
|
||
|
|
md5sum: 3970e82605c7d109bb348fc94e9eecc0
|
||
|
|
- path: output/bbmap/test.trim_2.fastq.gz
|
||
|
|
md5sum: 3970e82605c7d109bb348fc94e9eecc0
|