mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 08:12:03 +00:00
15 lines
505 B
Text
15 lines
505 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { GENMAP_INDEX } from '../../../../software/genmap/index/main.nf' addParams( options: [:] )
|
||
|
|
include { GENMAP_MAPPABILITY } from '../../../../software/genmap/mappability/main.nf' addParams( options: [args : '-K 50 -E 2 -w -t -bg'] )
|
||
|
|
|
||
|
|
workflow test_genmap_map {
|
||
|
|
|
||
|
|
input = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
||
|
|
|
||
|
|
GENMAP_INDEX ( input )
|
||
|
|
GENMAP_MAPPABILITY ( GENMAP_INDEX.out.index )
|
||
|
|
}
|