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18 lines
576 B
Text
18 lines
576 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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params.fragment_size = 1000
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include { DEEPTOOLS_PLOTFINGERPRINT } from '../../../../software/deeptools/plotfingerprint/main.nf' addParams( options: [:] )
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workflow test_deeptools_plotfingerprint {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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]
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DEEPTOOLS_PLOTFINGERPRINT ( input )
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}
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