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18 lines
630 B
Text
18 lines
630 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HMMER_HMMALIGN } from '../../../../software/hmmer/hmmalign/main.nf' addParams( options: [:] )
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workflow test_hmmer_hmmalign {
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input = [
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[ id:'test' ], // meta map
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file('https://raw.githubusercontent.com/erikrikarddaniel/test-datasets/modules/data/delete_me/e_coli_k12_16s.fna') // Change to params.test_data syntax after the data is included in tests/config/test_data.config
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]
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hmm = file('https://raw.githubusercontent.com/erikrikarddaniel/test-datasets/modules/data/delete_me/bac.16S_rRNA.hmm')
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HMMER_HMMALIGN ( input, hmm )
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}
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