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59 lines
1.5 KiB
YAML
59 lines
1.5 KiB
YAML
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name: controlfreec_makegraph
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description: Plot Freec output
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keywords:
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- cna
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- cnv
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- somatic
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- single
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- tumor-only
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tools:
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- controlfreec:
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description: Copy number and genotype annotation from whole genome and whole exome sequencing data.
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homepage: http://boevalab.inf.ethz.ch/FREEC
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documentation: http://boevalab.inf.ethz.ch/FREEC/tutorial.html
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tool_dev_url: https://github.com/BoevaLab/FREEC/
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doi: "10.1093/bioinformatics/btq635"
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licence: ["GPL >=2"]
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input:
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# Only when we have meta
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ratio:
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type: file
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description: ratio file generated by FREEC
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pattern: "*.ratio.txt"
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- baf:
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type: file
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description: .BAF file generated by FREEC
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pattern: "*.BAF"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- png_baf:
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type: file
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description: Image of BAF plot
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pattern: "*_BAF.png"
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- png_ratio_log2:
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type: file
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description: Image of ratio log2 plot
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pattern: "*_ratio.log2.png"
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- png_ratio:
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type: file
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description: Image of ratio plot
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pattern: "*_ratio.png"
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authors:
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- "@FriederikeHanssen"
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