nf-core_modules/software/bedtools/merge/test/main.nf

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2020-07-14 14:46:49 +00:00
#!/usr/bin/env nextflow
nextflow.preview.dsl = 2
params.bedtools_merge_args = '' //''-s -c 6 -o distinct'
include check_output from '../../../../tests/functions/check_process_outputs.nf' // params(params)
include BEDTOOLS_MERGE from '../main.nf' params(params)
// Define input channels
ch_input = Channel.fromPath('../../test_data_set/A.bed')
//ch_input = Channel.fromPath('./input_data/JK2067_downsampled_s0.1.bam')
// Run the workflow
workflow {
BEDTOOLS_MERGE(ch_input, params.bedtools_merge_args)
// .check_output()
}