nf-core_modules/.github/workflows/multiqc.yml

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name: multiqc
on:
push:
paths:
- software/multiqc/**
- .github/workflows/multiqc.yml
- tests
pull_request:
paths:
- software/multiqc/**
- .github/workflows/multiqc.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
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strategy:
matrix:
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nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
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- uses: actions/checkout@v2
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- name: Install Nextflow
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env:
NXF_VER: ${{ matrix.nxf_version }}
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run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
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- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
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# Test the module
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- run: pytest --kwdof --tag multiqc --symlink --wt 2
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- name: Upload logs on failure
if: ${{ failure() }}
uses: actions/upload-artifact@v2
with:
name: logs
path: |
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/tmp/pytest_workflow_*/*/.nextflow.log
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/tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err