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34 lines
922 B
YAML
34 lines
922 B
YAML
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name: cat_fastq
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description: Concatenates fastq files
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keywords:
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- fastq
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- concatenate
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tools:
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- cat:
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description: |
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The cat utility reads files sequentially, writing them to the standard output.
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documentation: https://www.gnu.org/software/coreutils/manual/html_node/cat-invocation.html
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: list
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description: |
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List of input FastQ files to be concatenated.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: Merged fastq file
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pattern: "*.{merged.fastq.gz}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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