nf-core_modules/tests/modules/seqtk/seq/test.yml

- name: seqtk seq test_seqtk_seq
  command: nextflow run tests/modules/seqtk/seq -entry test_seqtk_seq -c tests/config/nextflow.config
  tags:
    - seqtk/seq
    - seqtk
  files:
    - path: output/seqtk/test.seqtk-seq.fasta.gz
      md5sum: 50d73992c8c7e56dc095ef47ec52a754

- name: seqtk seq test_seqtk_seq_fq
  command: nextflow run tests/modules/seqtk/seq -entry test_seqtk_seq_fq -c tests/config/nextflow.config
  tags:
    - seqtk/seq
    - seqtk
  files:
    - path: output/seqtk/test.seqtk-seq.fasta.gz
      contains:
        - ">ERR5069949"
Seqtk seq (#1340) * Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Adding code and configs for seqtk/seq module * Re-tested module following minor code update * removed trailing whitespace errors * Changed variable name to following reviewer suggestions Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com> 2022-02-23 16:02:51 +00:00			`- name: seqtk seq test_seqtk_seq`
			`command: nextflow run tests/modules/seqtk/seq -entry test_seqtk_seq -c tests/config/nextflow.config`
			`tags:`
			`- seqtk/seq`
			`- seqtk`
			`files:`
			`- path: output/seqtk/test.seqtk-seq.fasta.gz`
			`md5sum: 50d73992c8c7e56dc095ef47ec52a754`

			`- name: seqtk seq test_seqtk_seq_fq`
			`command: nextflow run tests/modules/seqtk/seq -entry test_seqtk_seq_fq -c tests/config/nextflow.config`
			`tags:`
			`- seqtk/seq`
			`- seqtk`
			`files:`
			`- path: output/seqtk/test.seqtk-seq.fasta.gz`
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com> 2022-09-19 09:54:47 +00:00			`contains:`
			`- ">ERR5069949"`