2022-04-29 12:28:45 +00:00
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name: "sexdeterrmine"
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description: Calculate the relative coverage on the Gonosomes vs Autosomes from the output of samtools depth, with error bars.
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keywords:
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2022-06-10 09:03:01 +00:00
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- sex determination
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- genetic sex
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- relative coverage
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- ancient dna
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2022-04-29 12:28:45 +00:00
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tools:
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- "sexdeterrmine":
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description: "A python script carry out calculate the relative coverage of X and Y chromosomes, and their associated error bars, out of capture data."
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homepage: "https://github.com/TCLamnidis/Sex.DetERRmine"
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documentation: "https://github.com/TCLamnidis/Sex.DetERRmine/README.md"
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tool_dev_url: "https://github.com/TCLamnidis/Sex.DetERRmine"
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doi: "https://doi.org/10.1038/s41467-018-07483-5"
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licence: "['GPL v3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- depth:
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type: file
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2022-06-10 09:03:01 +00:00
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description: Output from samtools depth (with header)
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2022-04-29 12:28:45 +00:00
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- json:
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type: file
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description: JSON formatted table of relative coverages on the X and Y, with associated error bars.
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pattern: "*.json"
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- tsv:
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type: file
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description: TSV table of relative coverages on the X and Y, with associated error bars.
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pattern: "*.tsv"
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authors:
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- "@TCLamnidis"
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