nf-core_modules/modules/seqsero2/meta.yml

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name: seqsero2
description: Salmonella serotype prediction from reads and assemblies
keywords:
- fasta
- fastq
- salmonella
- sertotype
tools:
- seqsero2:
description: Salmonella serotype prediction from genome sequencing data
homepage: https://github.com/denglab/SeqSero2
documentation: https://github.com/denglab/SeqSero2
tool_dev_url: https://github.com/denglab/SeqSero2
doi: "10.1128/AEM.01746-19"
licence: ["GPL v2"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- seqs:
type: file
description: FASTQ or FASTA formated sequences
pattern: "*.{fq.gz,fastq.gz,fna.gz,fna,fasta.gz,fasta,fa.gz,fa}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- log:
type: file
description: A log of serotype antigen results
pattern: "*_log.txt"
- tsv:
type: file
description: Tab-delimited summary of the SeqSero2 results
pattern: "*_result.tsv"
- txt:
type: file
description: Detailed summary of the SeqSero2 results
pattern: "*_result.txt"
authors:
- "@rpetit3"