mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 20:38:17 +00:00
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
|
name: sratools_prefetch
|
||
|
|
description: Download sequencing data from the NCBI Sequence Read Archive (SRA).
|
||
|
|
keywords:
|
||
|
|
- sequencing
|
||
|
|
- fastq
|
||
|
|
- prefetch
|
||
|
|
tools:
|
||
|
|
- sratools:
|
||
|
|
description: SRA Toolkit and SDK from NCBI
|
||
|
|
homepage: https://github.com/ncbi/sra-tools
|
||
|
|
documentation: https://github.com/ncbi/sra-tools/wiki
|
||
|
|
tool_dev_url: https://github.com/ncbi/sra-tools
|
||
|
|
licence: ['Public Domain']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: >
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- id:
|
||
|
|
type: val
|
||
|
|
description: >
|
||
|
|
A string denoting an SRA id.
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: >
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- sra:
|
||
|
|
type: directory
|
||
|
|
description: >
|
||
|
|
Directory containing the ETL data for the given SRA id.
|
||
|
|
pattern: "*/*.sra"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@Midnighter"
|