2021-03-24 00:55:49 -04:00
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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2021-07-07 05:10:18 -04:00
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include { UCSC_BED12TOBIGBED } from '../../../../modules/ucsc/bed12tobigbed/main.nf' addParams( options: [:] )
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2021-03-24 00:55:49 -04:00
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workflow test_ucsc_bed12tobigbed {
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input = [ [ id: 'test' ], // meta map
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2021-04-09 08:47:05 -04:00
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[ file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true ) ]
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2021-03-24 05:53:41 -04:00
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]
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2021-04-09 08:47:05 -04:00
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sizes = file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true)
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2021-03-24 00:55:49 -04:00
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UCSC_BED12TOBIGBED ( input, sizes )
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}
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