nf-core_modules/tests/modules/yara/index/test.yml

- name: yara index test_yara_index
  command: nextflow run tests/modules/yara/index -entry test_yara_index -c tests/config/nextflow.config
  tags:
    - yara/index
    - yara
  files:
    - path: output/yara/yara/yara.rid.limits
      md5sum: 8b814661f30a0c9e350bfbcb454930ce
    - path: output/yara/yara/yara.sa.len
      md5sum: 45677f66c28c79c02250ceb8b58645e8
    - path: output/yara/yara/yara.sa.ind
      md5sum: 464314583efb5f07260b0efecc29a1ce
    - path: output/yara/yara/yara.lf.drp
      md5sum: 3ef99a87a4e44513f46d42f4261f7842
    - path: output/yara/yara/yara.txt.size
      md5sum: 063987b3c3f747be7d2b8043c9d91000
    - path: output/yara/yara/yara.rid.concat
      md5sum: 1e4e4c88ddeaf907a12f02f0d88367c5
    - path: output/yara/yara/yara.txt.concat
      md5sum: 6074d1933c9e7e5ab05fa0def5ce28c0
    - path: output/yara/yara/yara.lf.drs
      md5sum: 55a54008ad1ba589aa210d2629c1df41
    - path: output/yara/yara/yara.txt.limits
      md5sum: 4480a068db603e4c9a27bc4fa9ceaf14
    - path: output/yara/yara/yara.sa.val
      md5sum: ce57cc82e2d3ae7b9824210f54168ce9
    - path: output/yara/yara/yara.lf.pst
      md5sum: e8daba34298e99e42942435286f9b3f0
    - path: output/yara/yara/yara.lf.drv
      md5sum: cf6408307fe9fd7f99c33f521bf95550
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`- name: yara index test_yara_index`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run tests/modules/yara/index -entry test_yara_index -c tests/config/nextflow.config`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`tags:`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 04:10:52 -04:00			`- yara/index`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`- yara`
			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.rid.limits`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 8b814661f30a0c9e350bfbcb454930ce`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.sa.len`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 45677f66c28c79c02250ceb8b58645e8`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.sa.ind`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 464314583efb5f07260b0efecc29a1ce`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.lf.drp`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 3ef99a87a4e44513f46d42f4261f7842`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.txt.size`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 063987b3c3f747be7d2b8043c9d91000`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.rid.concat`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 1e4e4c88ddeaf907a12f02f0d88367c5`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.txt.concat`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 6074d1933c9e7e5ab05fa0def5ce28c0`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.lf.drs`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 55a54008ad1ba589aa210d2629c1df41`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.txt.limits`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: 4480a068db603e4c9a27bc4fa9ceaf14`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.sa.val`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: ce57cc82e2d3ae7b9824210f54168ce9`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.lf.pst`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: e8daba34298e99e42942435286f9b3f0`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 09:37:47 -04:00			`- path: output/yara/yara/yara.lf.drv`
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic 2021-03-24 12:14:52 -04:00			`md5sum: cf6408307fe9fd7f99c33f521bf95550`