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16 lines
639 B
Text
16 lines
639 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DIAMOND_MAKEDB } from '../../../../modules/diamond/makedb/main.nf' addParams( options: [:] )
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include { DIAMOND_BLASTP } from '../../../../modules/diamond/blastp/main.nf' addParams( options: [ suffix: '.diamond_blastp' ] )
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workflow test_diamond_blastp {
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db = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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fasta = [ file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]
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DIAMOND_MAKEDB ( db )
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DIAMOND_BLASTP ( [ [id:'test'], fasta ], DIAMOND_MAKEDB.out.db )
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}
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