nf-core_modules/tests/modules/gatk4/mergebamalignment/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { GATK4_MERGEBAMALIGNMENT } from '../../../../modules/gatk4/mergebamalignment/main.nf' addParams( options: [:] )
workflow test_gatk4_mergebamalignment {
input = [ [ id:'test' ], // meta map
file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
]
unmapped = file(params.test_data['sarscov2']['illumina']['test_unaligned_bam'], checkIfExists: true)
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
dict = file(params.test_data['sarscov2']['genome']['genome_dict'], checkIfExists: true)
GATK4_MERGEBAMALIGNMENT ( input, unmapped, fasta, dict )
}