nf-core_modules/tests/modules/pycoqc/test.yml

- name: pycoqc
  command: nextflow run ./tests/modules/pycoqc -entry test_pycoqc -c tests/config/nextflow.config
  tags:
    - pycoqc
  files:
    - path: output/pycoqc/pycoqc.json
      contains:
        - '"reads_number": 100,'
        - '"bases_number": 1160,'
        - '"N50": 12,'
    - path: output/pycoqc/pycoqc.html
Add pycoqc module (#424) * Add pycoqc module * Adding pycoqc module tests * Update pycoqc wilth new functions.nf * Update tests to check for json report content 2021-04-12 09:52:14 +00:00			`- name: pycoqc`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/pycoqc -entry test_pycoqc -c tests/config/nextflow.config`
Add pycoqc module (#424) * Add pycoqc module * Adding pycoqc module tests * Update pycoqc wilth new functions.nf * Update tests to check for json report content 2021-04-12 09:52:14 +00:00			`tags:`
			`- pycoqc`
			`files:`
			`- path: output/pycoqc/pycoqc.json`
			`contains:`
			`- '"reads_number": 100,'`
			`- '"bases_number": 1160,'`
			`- '"N50": 12,'`
			`- path: output/pycoqc/pycoqc.html`