nf-core_modules/tests/software/samtools/fastq/test.yml

- name: samtools fastq test_samtools_fastq
  command: nextflow run tests/software/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools_fastq
  files:
    - path: output/samtools/test_2.fastq.gz
      md5sum: 42d3afede8c7ef21577fcd3d07edaa83
    - path: output/samtools/test_1.fastq.gz
      md5sum: 166feed91e5109214b0a7a0d8c53641d
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 11:13:07 +00:00			`- name: samtools fastq test_samtools_fastq`
			`command: nextflow run tests/software/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config`
			`tags:`
			`- samtools`
modified the samtools/fastq module (#339) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu> 2021-03-23 17:43:52 +00:00			`- samtools_fastq`
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 11:13:07 +00:00			`files:`
modified the samtools/fastq module (#339) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu> 2021-03-23 17:43:52 +00:00			`- path: output/samtools/test_2.fastq.gz`
			`md5sum: 42d3afede8c7ef21577fcd3d07edaa83`
			`- path: output/samtools/test_1.fastq.gz`
			`md5sum: 166feed91e5109214b0a7a0d8c53641d`