nf-core_modules/software/iqtree/meta.yml

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name: iqtree
description: Produces a Newick format phylogeny from a multiple sequence alignment using the maxium likelihood algorithm. Capable of bacterial genome size alignments.
keywords:
- phylogeny
- newick
- maximum likelihood
tools:
- iqtree:
description: Efficient phylogenomic software by maximum likelihood.
homepage: http://www.iqtree.org
documentation: http://www.iqtree.org/doc
tool_dev_url: https://github.com/iqtree/iqtree2
doi: doi.org/10.1093/molbev/msaa015
licence: ['GPL v2-or-later']
input:
- alignment:
type: file
description: A FASTA format multiple sequence alignment file
pattern: "*.{fasta,fas,fa,mfa}"
output:
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- phylogeny:
type: file
description: A phylogeny in Newick format
pattern: "*.{treefile}"
authors:
- "@avantonder"
- "@aunderwo"