nf-core_modules/modules/cooler/digest/meta.yml

40 lines
1.1 KiB
YAML
Raw Normal View History

name: cooler_digest
description: Generate fragment-delimited genomic bins
keywords:
- digest
- enzyme
tools:
- cooler:
description: Sparse binary format for genomic interaction matrices
homepage: https://cooler.readthedocs.io/en/latest/index.html
documentation: https://cooler.readthedocs.io/en/latest/index.html
tool_dev_url: https://github.com/open2c/cooler
doi: "10.1093/bioinformatics/btz540"
licence: ['BSD-3-clause']
input:
- fasta:
type: file
description: Genome assembly FASTA file or folder containing FASTA files (uncompressed).
pattern: "*.{fasta,fa}"
- chromsizes:
type: file
description: Path to a chromsizes file.
- enzyme:
type: String
description: Name of restriction enzyme. e.g. CviQI.
documentation: http://biopython.org/DIST/docs/cookbook/Restriction.html
output:
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- bed:
type: file
description: A genome segmentation of restriction fragments as a BED file.
pattern: "*.{bed}"
authors:
- "@jianhong"