mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
43 lines
1 KiB
YAML
43 lines
1 KiB
YAML
|
name: genmap_mappability
|
||
|
|
description: create mappability file for a genome
|
||
|
|
keywords:
|
||
|
|
- mappability
|
||
|
|
tools:
|
||
|
|
- genmap:
|
||
|
|
description: Ultra-fast computation of genome mappability.
|
||
|
|
homepage: https://github.com/cpockrandt/genmap
|
||
|
|
documentation: https://github.com/cpockrandt/genmap
|
||
|
|
tool_dev_url: https://github.com/cpockrandt/genmap
|
||
|
|
doi: "10.1093/bioinformatics/btaa222"
|
||
|
|
licence: ['BSD']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: fasta file
|
||
|
|
pattern: "*.{fasta,fa}"
|
||
|
|
- index:
|
||
|
|
type: file
|
||
|
|
description: index file
|
||
|
|
|
||
|
|
output:
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- wig:
|
||
|
|
type: file
|
||
|
|
description: genmap wig mappability file
|
||
|
|
pattern: "*.wig"
|
||
|
|
- bedgraph:
|
||
|
|
type: file
|
||
|
|
description: genmap bedgraph mappability file
|
||
|
|
pattern: "*.bedgraph"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: genmap text mappability file
|
||
|
|
pattern: "*.txt"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@jianhong"
|