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https://github.com/MillironX/nf-core_modules.git
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35 lines
970 B
YAML
35 lines
970 B
YAML
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name: iqtree
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description: Produces a Newick format phylogeny from a multiple sequence alignment using the maxium likelihood algorithm. Capable of bacterial genome size alignments.
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keywords:
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- phylogeny
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- newick
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- maximum likelihood
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tools:
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- iqtree:
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description: Efficient phylogenomic software by maximum likelihood.
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homepage: http://www.iqtree.org
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documentation: http://www.iqtree.org/doc
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tool_dev_url: https://github.com/iqtree/iqtree2
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doi: doi.org/10.1093/molbev/msaa015
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licence: ['GPL v2-or-later']
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input:
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- alignment:
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type: file
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description: A FASTA format multiple sequence alignment file
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pattern: "*.{fasta,fas,fa,mfa}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- phylogeny:
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type: file
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description: A phylogeny in Newick format
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pattern: "*.{treefile}"
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authors:
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- "@avantonder"
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- "@aunderwo"
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