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https://github.com/MillironX/nf-core_modules.git
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52 lines
1.2 KiB
YAML
52 lines
1.2 KiB
YAML
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name: maltextract
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description: Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
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keywords:
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- malt
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- MaltExtract
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- HOPS
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- alignment
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- metagenomics
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- ancient DNA
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- aDNA
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- palaeogenomics
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- archaeogenomics
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- microbiome
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- authentication
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- damage
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- edit distance
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tools:
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- maltextract:
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description: Java tool to work with ancient metagenomics
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homepage: https://github.com/rhuebler/hops
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documentation: https://github.com/rhuebler/hops
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tool_dev_url: https://github.com/rhuebler/hops
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doi: "https://doi.org/10.1186/s13059-019-1903-0"
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licence: ['GPL 3']
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input:
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- rma6:
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type: file
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description: RMA6 files from MALT
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pattern: "*.rma6"
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- taxon_list:
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type: file
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description: List of target taxa to evaluate
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pattern: "*.txt"
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- ncbi_dir:
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type: directory
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description: Directory containing NCBI taxonomy map and tre files
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pattern: "${ncbi_dir}/"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- results:
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type: directory
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description: Directory containing MaltExtract text results files
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pattern: "*.rma6"
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authors:
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- "@jfy133"
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