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52 lines
1.3 KiB
YAML
52 lines
1.3 KiB
YAML
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name: pbccs
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description: Pacbio ccs - Generate Higly Accurate Single-Molecule Consensus Reads
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keywords:
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- ccs
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tools:
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- pbccs:
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description: pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
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homepage: https://github.com/PacificBiosciences/pbbioconda
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documentation: https://ccs.how/
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tool_dev_url: https://github.com/PacificBiosciences/ccs
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doi: ""
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licence: ['BSD-3-clause-Clear']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: Raw subreads bam
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pattern: "*.subreads.bam"
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- pbi:
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type: file
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description: Pacbio BAM Index
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pattern: "*.pbi"
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- chunk_num:
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-type: integer
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-description: BAM part to process
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- chunk_on:
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-type: integer
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-description: Total number of bam parts to process
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- css:
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type: file
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description: Consensus sequences
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pattern: "*.ccs.bam"
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authors:
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- "@sguizard"
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