nf-core_modules/modules/pydamage/analyze/meta.yml

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name: pydamage_analyze
description: Damage parameter estimation for ancient DNA
keywords:
- ancient DNA
- aDNA
- de novo assembly
- filtering
- damage
- deamination
- miscoding lesions
- C to T
- palaeogenomics
- archaeogenomics
- palaeogenetics
- archaeogenetics
tools:
- pydamage:
description: Damage parameter estimation for ancient DNA
homepage: https://github.com/maxibor/pydamage
documentation: https://pydamage.readthedocs.io/
tool_dev_url: https://github.com/maxibor/pydamage
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
- bai:
type: file
description: BAM/CRAM/SAM index file
pattern: "*.{bai,crai,sai}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- csv:
type: file
description: PyDamage results as csv files
pattern: "*.csv"
authors:
- "@maxibor"