2020-08-07 14:35:19 +00:00
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name: samtools_index
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on:
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push:
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paths:
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- software/samtools/index/**
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2020-12-01 17:40:16 +00:00
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- .github/workflows/samtools_index.yml
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2020-11-25 03:24:55 +00:00
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- tests/software/samtools/**
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2020-08-07 14:35:19 +00:00
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pull_request:
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paths:
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- software/samtools/index/**
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2020-12-01 17:40:16 +00:00
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- .github/workflows/samtools_index.yml
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2020-11-25 03:24:55 +00:00
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- tests/software/samtools/**
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2020-08-07 14:35:19 +00:00
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jobs:
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ci_test:
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runs-on: ubuntu-latest
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env:
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NXF_ANSI_LOG: false
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steps:
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2020-11-25 02:24:34 +00:00
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- uses: actions/checkout@v2
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2020-08-07 14:35:19 +00:00
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2020-11-25 02:24:34 +00:00
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- name: Install Nextflow
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run: |
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export NXF_VER="20.07.1"
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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2020-08-07 14:35:19 +00:00
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2020-11-25 02:24:34 +00:00
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: "3.x"
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- name: Install dependencies
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run: python -m pip install --upgrade pip pytest-workflow
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2020-08-07 14:35:19 +00:00
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2020-11-25 02:24:34 +00:00
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# Test the module
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- run: pytest --tag samtools_index --symlink --wt 2
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