nf-core_modules/tests/modules/porechop/test.yml

- name: porechop test_porechop
  command: nextflow run ./tests/modules/porechop -entry test_porechop -c ./tests/config/nextflow.config  -c ./tests/modules/porechop/nextflow.config
  tags:
    - porechop
  files:
    - path: output/porechop/test_porechop.fastq.gz
      md5sum: 08f314ae9f162c8dcc27e5b513d2064d
    - path: output/porechop/test_porechop.log
      contains: ["Saving trimmed reads to file"]
add `porechop` module (#914) * add module main porechop * update porechop main * add porechop functions * update meta porechop * add test main porechop * add porechop pytest yml * add porechop test.yml * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * re-add porechop avoid conflict * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * fix prefix suffix Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> 2021-10-28 11:21:36 +00:00			`- name: porechop test_porechop`
Update PORECHOP module to output log file (#1870) Update porechop to output log file 2022-07-12 14:07:31 +00:00			`command: nextflow run ./tests/modules/porechop -entry test_porechop -c ./tests/config/nextflow.config -c ./tests/modules/porechop/nextflow.config`
add `porechop` module (#914) * add module main porechop * update porechop main * add porechop functions * update meta porechop * add test main porechop * add porechop pytest yml * add porechop test.yml * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * re-add porechop avoid conflict * Update modules/porechop/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * fix prefix suffix Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> 2021-10-28 11:21:36 +00:00			`tags:`
			`- porechop`
			`files:`
			`- path: output/porechop/test_porechop.fastq.gz`
			`md5sum: 08f314ae9f162c8dcc27e5b513d2064d`
Update PORECHOP module to output log file (#1870) Update porechop to output log file 2022-07-12 14:07:31 +00:00			`- path: output/porechop/test_porechop.log`
			`contains: ["Saving trimmed reads to file"]`