nf-core_modules/modules/pairix/meta.yml

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name: pairix
description: |
a tool for indexing and querying on a block-compressed text file
containing pairs of genomic coordinates
keywords:
- index
tools:
- pairix:
description: 2D indexing on bgzipped text files of paired genomic coordinates
homepage: "https://github.com/4dn-dcic/pairix"
documentation: "https://github.com/4dn-dcic/pairix"
tool_dev_url: "https://github.com/4dn-dcic/pairix"
doi: ""
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- pair:
type: file
description: pair file
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- index:
type: file
description: pair index file
pattern: "*.px2"
authors:
- "@jianhong"