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nf-core_modules/tests/software/seqtk/sample/main.nf

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Request to review code for seqtk/sample module (#488) * added files * removed file * added file * changed files * changed files * edited file * edited file * edited files * edited files * edited files * edited tags * edited tags * edited tags * edited tags Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com>
2021-05-09 22:55:35 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SEQTK_SAMPLE } from '../../../../software/seqtk/sample/main.nf' addParams( options: [ 'args': '-s100', 'suffix':'.sampled' ] )
Update comments with new style (#497) * Update comment style on functions.nf files * Update test main.nf comments * Add meta for ggread
2021-05-12 13:56:46 +00:00
//
// Test with single-end data
//
Request to review code for seqtk/sample module (#488) * added files * removed file * added file * changed files * changed files * edited file * edited file * edited files * edited files * edited files * edited tags * edited tags * edited tags * edited tags Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com>
2021-05-09 22:55:35 +00:00
workflow test_seqtk_sample_single_end {
Update comments with new style (#497) * Update comment style on functions.nf files * Update test main.nf comments * Add meta for ggread
2021-05-12 13:56:46 +00:00
Request to review code for seqtk/sample module (#488) * added files * removed file * added file * changed files * changed files * edited file * edited file * edited files * edited files * edited files * edited tags * edited tags * edited tags * edited tags Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com>
2021-05-09 22:55:35 +00:00
input = [ [ id:'test', single_end:true ], // meta map
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
SEQTK_SAMPLE ( input, 250000 )
}
Update comments with new style (#497) * Update comment style on functions.nf files * Update test main.nf comments * Add meta for ggread
2021-05-12 13:56:46 +00:00
//
// Test with paired-end data
//
Request to review code for seqtk/sample module (#488) * added files * removed file * added file * changed files * changed files * edited file * edited file * edited files * edited files * edited files * edited tags * edited tags * edited tags * edited tags Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com>
2021-05-09 22:55:35 +00:00
workflow test_seqtk_sample_paired_end {
input = [ [ id:'test', single_end:false ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
]
SEQTK_SAMPLE ( input, 250000 )
}
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