mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
42 lines
1 KiB
YAML
42 lines
1 KiB
YAML
|
name: blast_tblastn
|
||
|
|
description: Queries a BLAST DNA database
|
||
|
|
keywords:
|
||
|
|
- fasta
|
||
|
|
- blast
|
||
|
|
- tblastn
|
||
|
|
- DNA sequence
|
||
|
|
tools:
|
||
|
|
- blast:
|
||
|
|
description: |
|
||
|
|
Protein to Translated Nucleotide BLAST.
|
||
|
|
homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
|
||
|
|
documentation: https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs
|
||
|
|
doi: 10.1016/S0022-2836(05)80360-2
|
||
|
|
licence: ["US-Government-Work"]
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Input fasta file containing queries sequences
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
- db:
|
||
|
|
type: directory
|
||
|
|
description: Directory containing blast database
|
||
|
|
pattern: "*"
|
||
|
|
output:
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: File containing blastn hits
|
||
|
|
pattern: "*.{tblastn.txt}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
authors:
|
||
|
|
- "@yumisims"
|
||
|
|
- "@gq2"
|