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18 lines
680 B
Text
18 lines
680 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PICARD_LIFTOVERVCF } from '../../../../modules/picard/liftovervcf/main.nf'
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workflow test_picard_liftovervcf {
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input_vcf = [ [ id:'test' ],
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true)
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]
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dict = file(params.test_data['homo_sapiens']['genome']['genome_dict'], checkIfExists: true)
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chain = file(params.test_data['homo_sapiens']['genome']['genome_chain_gz'], checkIfExists: true)
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fasta = [ file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true) ]
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PICARD_LIFTOVERVCF ( input_vcf, dict, chain, fasta )
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}
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